ISA Configurations

These pre-defined configurations files, created using the ISAcreator configurator tool, are uploaded in ISAcreator to customizes the fields displayed by this editor tool. The configurations provided here are designed to meet the requirements of one or more minimum information checklist(s), specifying the required fields, and/or enabling values to be drawn from a set of ontology terms.

 

The ‘ISA-default-configuration’ is designed to fit several types of assays (where one or more different measurements and technologies are used). Contact us if you need a new configuration that fit your specific needs, e.g. a different fields, or checklist, or set of ontologies/controlled vocabularies..

 

Name Checklists Description Download
Default Configuration Files MIAME,MINSEQE,MIAPE, The latest default ISA configuration files that come packaged with the tool. Get Configuration
Scientific Data Many NPG Scientific Data configuration files. Get Configuration
Metabolights Core Information for Metabolomic Reporting (CIMR) Configuration files from the Metabolights repository for metabolomics data. Get Configuration From EMBL-EBI Metabolights or                              Get Configuration from ISA github repo
diXa warehouse Many diXa warehouse configuration files. Get Configuration
ISA-Tab Nano Nano particle reporting guidelines ISA-Tab Nano configuration files (to be added soon). Get Configuration
PKAcoop PKAcoop configuration files. Get Configuration
TransPLANT and Plant High Throughput Phenotyping MIAPPE TransPLANT Get Configuration
 

 

ISA configuration Core 1.2 and MIxS version 4: download all
MIxS water GSC MIxS water v4 ISA configuration conforming to the GSC MIxS water checklist.
MIxS waste water sludge GSC MIxS waste water sludge v4 ISA configuration conforming to the GSC MIxS waste water sludge checklist.
MIxS soil GSC MIxS soil v4 ISA configuration conforming to the GSC MIxS soil checklist.
MIxS sediment GSC MIxS sediment v4 ISA configuration conforming to the GSC MIxS sediment checklist.
MIxS plant associated GSC MIxS plant associated v4 ISA configuration conforming to the GSC MIxS plant associated checklist.
MIxS natural or artificial environment GSC MIxS natural or artificial environment v4 ISA configuration conforming to the MIxS natural or artificial environment checklist.
MiXS Human Vaginal GSC MiXS Human Vaginal v4 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Skin GSC MiXS Human Skin v4 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Oral GSC MiXS Human Oral v4 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Gut GSC MiXS Human Gut v4 ISA configuration conforming to the GSC MiXS Human Gut checklist.
MiXS Human Associated GSC MiXS Human Associated v4 ISA configuration conforming to the GSC MiXS Human Associated checklist.
MiXS Host Associated GSC MiXS Host Associated v4 ISA configuration conforming to the GSC MiXS Host Associated checklist.
MiXS build environment GSC MiXS built environment v4 ISA configuration conforming to the GSC MiXS built environment checklist.
MiXS Air GSC MiXS Air v4 ISA configuration conforming to the GSC MiXS Air checklist.
ISA configuration CORE 1.1 and MIxS version 3: DOWNLOAD ALL
MIxS water GSC MIxS water v3 ISA configuration conforming to the GSC MIxS water checklist.
MIxS waste water sludge GSC MIxS waste water sludge v3 ISA configuration conforming to the GSC MIxS waste water sludge checklist.
MIxS soil GSC MIxS soil v3 ISA configuration conforming to the GSC MIxS soil checklist.
MIxS sediment GSC MIxS sediment v3 ISA configuration conforming to the GSC MIxS sediment checklist.
MIxS plant associated GSC MIxS plant associated v3 ISA configuration conforming to the GSC MIxS plant associated checklist.
MIxS natural or artificial environment GSC MIxS natural or artificial environment v3 ISA configuration conforming to the MIxS natural or artificial environment checklist.
MiXS Human Vaginal GSC MiXS Human Vaginal v3 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Skin GSC MiXS Human Skin v3 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Oral GSC MiXS Human Oral v3 ISA configuration conforming to the GSC MiXS Human Oral checklist.
MiXS Human Gut GSC MiXS Human Gut v3 ISA configuration conforming to the GSC MiXS Human Gut checklist.
MiXS Human Associated GSC MiXS Human Associated v3 ISA configuration conforming to the GSC MiXS Human Associated checklist.
MiXS Host Associated GSC MiXS Host Associated v3 ISA configuration conforming to the GSC MiXS Host Associated checklist.
MiXS Air GSC MiXS Air v3 ISA configuration conforming to the GSC MiXS Air checklist.