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Contents

Hands-on Practicals

Jupyter Notebooks to familiarize with the ISA-API

The fundamentals: reading and validating ISA documents.

1. reading-isa-tab-from-disk-exploring-and-validating.ipynb

Using study design information to create ISA documents.

1. investigation-from-datascriptor-config-observational-variables-and-ontology-annotation.ipynb

2. create-a-repeated-treatment-design-with-ISA-descriptor.ipynb

3. create_2x2x2_factorial_design.ipynb

4. light-sensitity-study-repeated-treatment-design.ipynb

ISA-API hard coded strings

1. isa-protocol-type-synonym-effect-on-assay-table.ipynb

Documented known issues

1. isa-tab-unused-sources-not-serialized-brapi.ipynb

Release Notes Reading ISA-Tab from files and Validating ISA-Tab files