The ISA cookbook
ISA tools API
ISA-API installation
ISA data model
Reading in ISA-Tab or ISA JSON
Creating ISA content
Describing a simple experiment with
isa
objects
Validating ISA-Tab and ISA-JSON
Converting between ISA format
Importing data into ISA formats
Exporting data from ISA formats
ISA API example programs
createSimpleISAtab.py
createSimpleISAjson.py
validateISAtab.py
validateISAjson.py
Downloading files stored in Github
Release Notes
Hands-on Practicals
Reading ISA-Tab from files and Validating ISA-Tab files
Programmatic recreation of BII-S-3 with the ISA-API
ISA-API built-in semantic requirements for
protocol
type
values
Create a simple ISA descriptor
Create an ISA Study representing a 2x2x2 factorial design with single measurements
Create a repeated treatment design with ISA descriptor
Light Sensitivity Experiment:
ISA Create Mode example
Create ISA-API Investigation from Datascriptor Study Design configuration
Known Issue: unused ISA Source aren’t serialized to ISA-Tab
repository
open issue
Index
